Description
beta-1,4-N-acetyl-galactosaminyl transferase 1 [Source:HGNC Symbol;Acc:4117]
Gene Synonyms
GALGT, GALNACT, GalNAc-T, SIAT2, SPG26, beta1-4GalNAc-T
Location
Chromosome 12: 58,017,193-58,027,138 reverse strand.
GRCh37:CM000674.1
About this gene
This gene has 16 transcripts (splice variants), 1 paralogue and is associated with 1 phenotype.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000341156.4 | B4GALNT1-002 | 3036 | 533aa | ENSP00000341562.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8950 | F8TDK4 F8VR44 F8VU35 F8VW33 Q00973 | NM_001478.4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000550764.1 | B4GALNT1-004 | 1967 | 328aa | ENSP00000450303.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS61171 | F8TDK7 F8VR44 F8VU35 F8VW33 Q8N636 | NM_001276469.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000418555.2 | B4GALNT1-006 | 1861 | 478aa | ENSP00000401601.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS61170 | B4DE26 F8TDK5 | NM_001276468.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000552350.1 | B4GALNT1-005 | 1649 | 328aa | ENSP00000448500.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS61171 | F8TDK7 F8VR44 F8VU35 F8VW33 Q8N636 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000449184.3 | B4GALNT1-003 | 1633 | 304aa | ENSP00000473533.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DSP5 F8TDK6 F8VR44 F8VU35 F8VW33 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000548888.1 | B4GALNT1-014 | 841 | 237aa | ENSP00000447945.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VR44 F8VU35 F8VW33 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000551220.1 | B4GALNT1-010 | 837 | 120aa | ENSP00000446566.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VR44 F8VW33 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000547741.1 | B4GALNT1-016 | 453 | 151aa | ENSP00000448577.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000552798.1 | B4GALNT1-007 | 1945 | 231aa | ENSP00000447076.1 | Nonsense mediated decay | F8VR44 F8VW33 F8W1A7 | - | - | |
| ENST00000549391.1 | B4GALNT1-015 | 879 | 127aa | ENSP00000447750.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000548487.1 | B4GALNT1-013 | 562 | 81aa | ENSP00000449534.1 | Nonsense mediated decay | F8VW33 | - | - | |
| ENST00000552219.1 | B4GALNT1-011 | 502 | 96aa | ENSP00000448340.1 | Nonsense mediated decay | F8VSE0 | - | - | |
| ENST00000550943.1 | B4GALNT1-012 | 482 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000553142.1 | B4GALNT1-001 | 5580 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000552468.1 | B4GALNT1-009 | 2538 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000551925.1 | B4GALNT1-008 | 1003 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
