Description
autophagy related 16-like 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:21498]
Gene Synonyms
APG16L, ATG16A, ATG16L, FLJ10035, IBD10, WDR30
Location
Chromosome 2: 234,118,697-234,204,320 forward strand.
GRCh37:CM000664.1
About this gene
This gene has 18 transcripts (splice variants), 12 paralogues and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000392017.4 | ATG16L1-001 | 3405 | 607aa | ENSP00000375872.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2503 | C9J8C6 D9N2U2 F8WAF9 Q17RG0 Q53SV2 Q676U5 | NM_030803.6 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000392018.1 | ATG16L1-005 | 3313 | 624aa | ENSP00000375873.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J8C6 D9N2U2 E7EVC7 F8WAF9 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000392020.4 | ATG16L1-003 | 3213 | 588aa | ENSP00000375875.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2502 | B7ZLM5 C9J8C6 D9N2U2 F8WAF9 Q676U5 | NM_017974.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000347464.5 | ATG16L1-201 | 2915 | 444aa | ENSP00000318259.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54438 | C9JAY7 D9N2U2 F8WAF9 Q676U5 | NM_198890.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000373525.5 | ATG16L1-004 | 2767 | 428aa | ENSP00000362625.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D9N2U2 F8WAF9 Q676U5 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000444735.1 | ATG16L1-007 | 691 | 177aa | ENSP00000409215.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JK97 F8WAF9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000417017.1 | ATG16L1-013 | 684 | 187aa | ENSP00000412046.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J1B2 F8WAF9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000419681.1 | ATG16L1-006 | 644 | 164aa | ENSP00000398773.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JAY7 D9N2U2 F8WAF9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000431917.1 | ATG16L1-012 | 589 | 55aa | ENSP00000397512.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J8C6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000392021.3 | ATG16L1-002 | 3301 | 38aa | ENSP00000375876.3 | Nonsense mediated decay | F8WAF9 | - | - | |
| ENST00000498620.1 | ATG16L1-015 | 740 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000464645.1 | ATG16L1-017 | 560 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000474148.1 | ATG16L1-008 | 4208 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000479942.1 | ATG16L1-009 | 3559 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000472242.1 | ATG16L1-018 | 911 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000473865.1 | ATG16L1-019 | 805 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000492298.1 | ATG16L1-016 | 591 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000485623.1 | ATG16L1-014 | 568 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
