Description
integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) [Source:HGNC Symbol;Acc:6139]
Gene Synonyms
CD49C, CD49c, GAP-B3, GAPB3, ILNEB, MSK18, VCA-2, VL3A, VLA3a
Location
Chromosome 17: 48,133,332-48,167,845 forward strand.
GRCh37:CM000679.1
About this gene
This gene has 17 transcripts (splice variants), 17 paralogues and is associated with 4 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000007722.7 | ITGA3-020 | 3665 | 1066aa | ENSP00000007722.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11557 | P26006 Q86SW1 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000320031.8 | ITGA3-001 | 4888 | 1051aa | ENSP00000315190.8 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11558 | B4E0H8 P26006 | NM_005501.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000544892.1 | ITGA3-201 | 1810 | 294aa | ENSP00000446133.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DDT0 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000506827.1 | ITGA3-014 | 827 | 221aa | ENSP00000426142.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000512553.1 | ITGA3-010 | 351 | 117aa | ENSP00000466652.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EMU3 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000506401.2 | ITGA3-003 | 1817 | 142aa | ENSP00000422826.2 | Nonsense mediated decay | D6R9X8 | - | - | |
| ENST00000510809.1 | ITGA3-012 | 518 | 84aa | ENSP00000425980.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000504417.1 | ITGA3-018 | 227 | 29aa | ENSP00000467851.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000505306.1 | ITGA3-002 | 5479 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000506437.1 | ITGA3-006 | 3055 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000570989.1 | ITGA3-019 | 2495 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000514834.1 | ITGA3-017 | 860 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000505552.1 | ITGA3-011 | 600 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000505612.1 | ITGA3-013 | 576 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000508100.1 | ITGA3-009 | 549 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000515147.1 | ITGA3-016 | 535 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000507771.1 | ITGA3-015 | 399 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
