Description
high mobility group box 1 [Source:HGNC Symbol;Acc:4983]
Gene Synonyms
DKFZp686A04236, HMG1, HMG3, SBP-1
Location
Chromosome 13: 31,032,884-31,191,734 reverse strand.
GRCh37:CM000675.1
About this gene
This gene has 9 transcripts (splice variants), 3 paralogues and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000405805.1 | HMGB1-012 | 4199 | 215aa | ENSP00000384678.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS9335 | P09429 Q5T7C0 Q9NYD7 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000341423.5 | HMGB1-004 | 2339 | 215aa | ENSP00000345347.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS9335 | P09429 Q5T7C0 Q9NYD7 | NM_002128.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000339872.4 | HMGB1-001 | 2319 | 215aa | ENSP00000343040.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS9335 | P09429 Q5T7C0 Q9NYD7 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000399489.1 | HMGB1-009 | 1727 | 158aa | ENSP00000382412.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5T7C0 Q5T7C4 Q9NYD7 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000399494.1 | HMGB1-011 | 1282 | 215aa | ENSP00000382417.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS9335 | P09429 Q5T7C0 Q9NYD7 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000326004.4 | HMGB1-003 | 821 | 158aa | ENSP00000369904.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5T7C0 Q5T7C4 Q9NYD7 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398908.3 | HMGB1-005 | 454 | 97aa | ENSP00000410465.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5T7C0 Q9NYD7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000468384.1 | HMGB1-007 | 503 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000490788.1 | HMGB1-008 | 425 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - |
