Transcript: ENST00000555028.1 LIN52-001

Description

lin-52 homolog (C. elegans) [Source:HGNC Symbol;Acc:19856]

Gene Synonyms

C14orf46, c14_5549

Location

About this transcript

This transcript has 6 exons, is annotated with 2 domains and features, is associated with 46783 variant alleles and maps to 378 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000555028.1	LIN52-001	2774	116aa	ENSP00000451812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32120	B3KN83 Q52LA3	NM_001024674.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000554938.1	LIN52-003	566	97aa	ENSP00000452513.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000554076.1	LIN52-004	585	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553404.1	LIN52-002	2339	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554289.1	LIN52-005	271	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,774 bps, Translation length: 116 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q52LA3

CCDS

This transcript is a member of the Human CCDS set: CCDS32120

Version

ENST00000555028.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000412316 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.