Transcript: ENST00000361373.4 LDB3-001

Description

LIM domain binding 3 [Source:HGNC Symbol;Acc:15710]

Gene Synonyms

CMD1C, CYPHER, KIAA0613, LDB3Z1, LDB3Z4, LVNC3, MFM4, ORACLE, PDLIM6, ZASP

Location

Chromosome 10: 88,428,428-88,495,825 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 35 domains and features, is associated with 29984 variant alleles and maps to 587 oligo probes.

Gene

This transcript is a product of gene ENSG00000122367.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000429277.2	LDB3-205	5436	732aa	ENSP00000401437.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53550	O75112	NM_001171610.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000361373.4	LDB3-001	5297	727aa	ENSP00000355296.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7377	O75112	NM_007078.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000458213.2	LDB3-206	5091	617aa	ENSP00000409148.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41544	O75112	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000263066.6	LDB3-201	4966	617aa	ENSP00000263066.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41544	O75112	NM_001080114.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000352360.5	LDB3-203	4650	470aa	ENSP00000263067.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75112	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000372056.4	LDB3-204	1899	398aa	ENSP00000361126.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53549	O75112	NM_001171611.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000542786.1	LDB3-207	1889	231aa	ENSP00000438866.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75112	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000310944.6	LDB3-202	1695	330aa	ENSP00000311913.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44450	B4DND5 O75112	NM_001080115.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000372066.3	LDB3-002	1598	283aa	ENSP00000361136.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41545	B4DUL3 O75112	NM_001080116.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000477489.1	LDB3-005	433	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 5,297 bps, Translation length: 727 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75112

CCDS

This transcript is a member of the Human CCDS set: CCDS7377

Version

ENST00000361373.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000049160 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000361373.4 LDB3-001

Summary