Transcript: ENST00000272298.7 CALM2-001

Description

calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445]

Gene Synonyms

CALM, CALM1, CALM3, CALML2, CAM, CAM1, CAMI, CAMII, CPVT4, DD132, PHKD, PHKD2, PHKD3, caM

Location

Chromosome 2: 47,387,221-47,403,740 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 22 domains and features, is associated with 10471 variant alleles and maps to 414 oligo probes.

Gene

This transcript is a product of gene ENSG00000143933.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000272298.7	CALM2-001	1302	149aa	ENSP00000272298.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1832	B4DJ51 G3V361 P62158 Q96HY3	NM_001743.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000409563.1	CALM2-007	770	196aa	ENSP00000387065.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EMB3 G3V361 Q96HY3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000456319.1	CALM2-006	703	187aa	ENSP00000411440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V361 H0Y7A7 Q96HY3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000432899.1	CALM2-002	1004	65aa	ENSP00000406112.1	Nonsense mediated decay		F8WBR5	-	-
ENST00000484408.1	CALM2-009	682	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489742.1	CALM2-008	522	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460218.1	CALM2-003	4502	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482532.1	CALM2-004	1891	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,302 bps, Translation length: 149 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62158

CCDS

This transcript is a member of the Human CCDS set: CCDS1832

Version

ENST00000272298.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250789 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000272298.7 CALM2-001

Summary