Transcript: ENST00000305768.5 CEP89-001

Description

centrosomal protein 89kDa [Source:HGNC Symbol;Acc:25907]

Gene Synonyms

CCDC123, CEP123, FLJ14640

Location

Chromosome 19: 33,369,902-33,462,869 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 15 domains and features, is associated with 39122 variant alleles and maps to 742 oligo probes.

Gene

This transcript is a product of gene ENSG00000121289.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000305768.5	CEP89-001	2607	783aa	ENSP00000306105.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32987	Q96ST8	NM_032816.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590597.2	CEP89-005	1340	356aa	ENSP00000466442.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96ST8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000593276.2	CEP89-006	682	217aa	ENSP00000467839.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000586984.2	CEP89-004	2482	428aa	ENSP00000465141.1	Nonsense mediated decay		K7EJF0	-	-
ENST00000591698.1	CEP89-002	2367	173aa	ENSP00000467544.1	Nonsense mediated decay		K7EPU8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000591863.1	CEP89-010	2903	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000592401.1	CEP89-008	558	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000591205.1	CEP89-007	596	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 2,607 bps, Translation length: 783 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96ST8

CCDS

This transcript is a member of the Human CCDS set: CCDS32987

Version

ENST00000305768.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs745961, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HAPMAP-TSI, ESP6500:African_American, ESP6500:European_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000451300 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000305768.5 CEP89-001

Summary