Transcript: ENST00000009530.7 CD74-003

Description

CD74 molecule, major histocompatibility complex, class II invariant chain [Source:HGNC Symbol;Acc:1697]

Gene Synonyms

DHLAG, HLADG, II, Ia-GAMMA

Location

Chromosome 5: 149,781,715-149,792,314 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 21 domains and features, is associated with 9378 variant alleles and maps to 319 oligo probes.

Gene

This transcript is a product of gene ENSG00000019582.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000518797.1	CD74-004	1727	316aa	ENSP00000430614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O78208	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000353334.6	CD74-001	1449	232aa	ENSP00000230685.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47308	O19685 P04233	NM_004355.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377795.3	CD74-002	1138	160aa	ENSP00000367026.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34276	O19685 P04233	NM_001025158.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000009530.7	CD74-003	981	296aa	ENSP00000009530.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47309	O19685 O78208 P04233	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524315.1	CD74-011	584	152aa	ENSP00000429024.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ESL3 O19685	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523208.1	CD74-008	767	145aa	ENSP00000430654.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000522246.1	CD74-009	563	122aa	ENSP00000429641.1	Nonsense mediated decay		E7EQJ3 O19685	-	-
ENST00000523813.1	CD74-007	546	52aa	ENSP00000429478.1	Nonsense mediated decay		E7ER71 O19685	-	-
ENST00000517791.1	CD74-005	1015	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000517752.1	CD74-013	816	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000523836.1	CD74-006	724	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522153.1	CD74-010	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 981 bps, Translation length: 296 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P04233

CCDS

This transcript is a member of the Human CCDS set: CCDS47309

Version

ENST00000009530.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000374178 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000009530.7 CD74-003

Summary