Transcript: ENST00000518797.1 CD74-004

Description

CD74 molecule, major histocompatibility complex, class II invariant chain [Source:HGNC Symbol;Acc:1697]

Gene Synonyms

DHLAG, HLADG, II, Ia-GAMMA

Location

Chromosome 5: 149,781,262-149,792,295 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 21 domains and features, is associated with 9577 variant alleles and maps to 578 oligo probes.

Gene

This transcript is a product of gene ENSG00000019582.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000518797.1	CD74-004	1727	316aa	ENSP00000430614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O78208	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000353334.6	CD74-001	1449	232aa	ENSP00000230685.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47308	O19685 P04233	NM_004355.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377795.3	CD74-002	1138	160aa	ENSP00000367026.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34276	O19685 P04233	NM_001025158.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000009530.7	CD74-003	981	296aa	ENSP00000009530.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47309	O19685 O78208 P04233	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524315.1	CD74-011	584	152aa	ENSP00000429024.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ESL3 O19685	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523208.1	CD74-008	767	145aa	ENSP00000430654.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000522246.1	CD74-009	563	122aa	ENSP00000429641.1	Nonsense mediated decay		E7EQJ3 O19685	-	-
ENST00000523813.1	CD74-007	546	52aa	ENSP00000429478.1	Nonsense mediated decay		E7ER71 O19685	-	-
ENST00000517791.1	CD74-005	1015	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000517752.1	CD74-013	816	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000523836.1	CD74-006	724	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522153.1	CD74-010	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,727 bps, Translation length: 316 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000518797.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000374179 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000518797.1 CD74-004

Summary