Transcript: ENST00000579578.2 PNLIPRP2-005

Description

pancreatic lipase-related protein 2 [Source:HGNC Symbol;Acc:9157]

Gene Synonyms

PLRP2

Location

Chromosome HG311_PATCH: 118,380,818-118,404,609 forward strand.

About this transcript

This transcript has 12 exons, is associated with 11592 variant alleles and maps to 366 oligo probes.

Gene

This transcript is a product of gene ENSG00000266200.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq	Flags
ENST00000591655.1	PNLIPRP2-004	1589	356aa	ENSP00000468117.1	Nonsense mediated decay	-	-
ENST00000579578.2	PNLIPRP2-005	1410	469aa	ENSP00000463502.2	Pseudogene owing to a SNP/indel but in other individuals/haplotypes/strains the gene is translated.Polymorphic pseudogene	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588823.1	PNLIPRP2-003	622	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENST00000586762.1	PNLIPRP2-001	590	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENST00000589989.1	PNLIPRP2-002	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,410 bps, Translation length: 469 residues

Version

ENST00000579578.2

Type

Polymorphic pseudogene

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs4751995, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) ESP6500:European_American, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HAPMAP-TSI, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HapMap-CEU, ESP6500:African_American, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HapMap-HCB.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000460053 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000579578.2 PNLIPRP2-005

Summary