Transcript: ENST00000570643.1 CAPN5-007

Description

calpain 5 [Source:HGNC Symbol;Acc:1482]

Gene Synonyms

HTRA3, NCL3, nCL-3

Location

Chromosome HG414_PATCH: 76,796,008-76,823,954 forward strand.

About this transcript

This transcript has 3 exons, is associated with 13235 variant alleles and maps to 72 oligo probes.

Gene

This transcript is a product of gene ENSG00000262875.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000574625.1	CAPN5-004	2805	680aa	ENSP00000461226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EV01	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000571230.2	CAPN5-001	2791	640aa	ENSP00000461719.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PS73 O15484	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000576267.1	CAPN5-003	2333	640aa	ENSP00000458516.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PS73 O15484	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000572720.1	CAPN5-002	597	97aa	ENSP00000460508.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PS73	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000572669.1	CAPN5-005	534	52aa	ENSP00000466815.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7EP62	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000572522.1	CAPN5-008	2564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000570643.1	CAPN5-007	542	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 542 bps,

Version

ENST00000570643.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000460287 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000570643.1 CAPN5-007

Summary