Transcript: ENST00000572919.1 SHPK-001

Description

transient receptor potential cation channel subfamily V member 1 [Source:RefSeq peptide;Acc:NP_542435]

Gene Synonyms

CARKL, SHK, VR1

Location

About this transcript

This transcript has 14 exons, is annotated with 9 domains and features, is associated with 25930 variant alleles and maps to 424 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000572705.1	SHPK-002	4166	839aa	ENSP00000459962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45576	Q8IZY9	NM_080704.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000572919.1	SHPK-001	4753	478aa	ENSP00000461416.1	Nonsense mediated decay	CCDS11030	-	-	-

Summary

Statistics

Exons: 14, Coding exons: 7, Transcript length: 4,753 bps, Translation length: 478 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS11030

Version

ENST00000572919.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000438262 (version 1)

Annotation Attributes

dotter confirmed [Definitions]