Transcript: ENST00000570552.1 RFC2-004

Description

replication factor C (activator 1) 2, 40kDa [Source:HGNC Symbol;Acc:9970]

Gene Synonyms

A1, RFC40

Location

Chromosome HG1257_PATCH: 73,700,488-73,719,266 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 4 domains and features, is associated with 8570 variant alleles and maps to 286 oligo probes.

Gene

This transcript is a product of gene ENSG00000261911.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000576908.1	RFC2-002	1695	354aa	ENSP00000458995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8WDC9 P35250	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000573234.1	RFC2-001	1576	320aa	ENSP00000460590.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8WDC9 P35250 Q75MT5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574108.1	RFC2-009	957	52aa	ENSP00000459289.1	Nonsense mediated decay	H7C5S7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570552.1	RFC2-004	881	75aa	ENSP00000461364.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000576356.1	RFC2-006	871	77aa	ENSP00000460399.1	Nonsense mediated decay	F8WC37 F8WDC9	-	-
ENST00000571279.1	RFC2-005	853	101aa	ENSP00000460536.1	Nonsense mediated decay	F8WDC9 H7C5G4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000576280.1	RFC2-012	847	120aa	ENSP00000459726.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570503.2	RFC2-003	782	37aa	ENSP00000458190.1	Nonsense mediated decay	F8WDC9	-	-
ENST00000576165.1	RFC2-011	753	198aa	ENSP00000458880.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000572571.1	RFC2-008	730	87aa	ENSP00000458287.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570653.1	RFC2-010	726	28aa	ENSP00000460697.1	Nonsense mediated decay	H7C5S7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573574.1	RFC2-007	304	90aa	ENSP00000458924.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 4, Transcript length: 881 bps, Translation length: 75 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000570552.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project, projected to the alternate locus via a mapping from the primary assembly.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000351337 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000570552.1 RFC2-004

Summary