Transcript: ENST00000565606.1 SLC39A4-002

Description

solute carrier family 39 (zinc transporter), member 4 [Source:HGNC Symbol;Acc:17129]

Gene Synonyms

AEZ, AWMS2, ZIP4

Location

Chromosome HG243_PATCH: 145,467,317-145,471,415 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 20 domains and features, is associated with 3035 variant alleles and maps to 418 oligo probes.

Gene

This transcript is a product of gene ENSG00000261297.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000569401.1	SLC39A4-001	2174	647aa	ENSP00000456522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NX22	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565606.1	SLC39A4-002	2297	622aa	ENSP00000456328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NX22	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562427.1	SLC39A4-010	583	184aa	ENSP00000456159.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562134.1	SLC39A4-009	684	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000567569.1	SLC39A4-007	498	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000563735.1	SLC39A4-005	2778	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000562198.1	SLC39A4-006	795	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000561601.1	SLC39A4-004	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,297 bps, Translation length: 622 residues

Version

ENST00000565606.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000427065 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000565606.1 SLC39A4-002

Summary