Transcript: ENST00000428650.1 STRC-011

Description

stereocilin [Source:HGNC Symbol;Acc:16035]

Gene Synonyms

DFNB16

Location

Chromosome 15: 43,891,831-43,910,996 reverse strand.

About this transcript

This transcript has 28 exons, is annotated with 16 domains and features, is associated with 6923 variant alleles and maps to 1195 oligo probes.

Gene

This transcript is a product of gene ENSG00000242866.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000450892.2	STRC-001	5680	1775aa	ENSP00000401513.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10098	E7EPM8 Q7RTU9	NM_153700.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541030.1	STRC-201	4291	1002aa	ENSP00000440413.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXA4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432436.1	STRC-005	2259	663aa	ENSP00000407303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C2Q6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000428650.1	STRC-011	5386	969aa	ENSP00000415991.1	Nonsense mediated decay		E7EPM8 E9PBT5	-	-
ENST00000440125.1	STRC-012	4291	351aa	ENSP00000394866.1	Nonsense mediated decay		E7EPM8	-	-
ENST00000455136.1	STRC-006	1104	119aa	ENSP00000394755.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000485556.1	STRC-004	4253	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471703.1	STRC-002	3364	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000448437.2	STRC-003	2518	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483250.1	STRC-008	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470279.1	STRC-009	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460952.1	STRC-007	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493750.1	STRC-010	513	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 28, Coding exons: 10, Transcript length: 5,386 bps, Translation length: 969 residues

Version

ENST00000428650.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000317302 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000428650.1 STRC-011

Summary