Transcript: ENST00000561082.1 PATL2-007

Description

protein associated with topoisomerase II homolog 2 (yeast) [Source:HGNC Symbol;Acc:33630]

Gene Synonyms

Pat1a, hPat1a

Location

Chromosome 15: 44,957,934-44,959,476 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 658 variant alleles and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSG00000229474.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000434130.1	PATL2-201	1950	543aa	ENSP00000416673.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45253	C9JE40 H0YMQ2	NM_001145112.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560775.1	PATL2-001	1913	543aa	ENSP00000453915.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45253	C9JE40 H0YMQ2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560780.1	PATL2-003	1863	354aa	ENSP00000453695.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YMQ2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560110.1	PATL2-002	765	125aa	ENSP00000453898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YN77	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000558809.1	PATL2-006	531	158aa	ENSP00000453723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YMS5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558481.1	PATL2-004	845	188aa	ENSP00000454201.1	Nonsense mediated decay		H0YN77	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558573.1	PATL2-008	2100	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558159.1	PATL2-005	867	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561082.1	PATL2-007	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 559 bps,

Version

ENST00000561082.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000415951 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000561082.1 PATL2-007

Summary