Transcript: ENST00000417508.1 VPS16-004

Description

vacuolar protein sorting 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:14584]

Gene Synonyms

hVPS16

Location

Chromosome 20: 2,821,409-2,842,739 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 3 domains and features, is associated with 10678 variant alleles and maps to 267 oligo probes.

Gene

This transcript is a product of gene ENSG00000215305.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380445.3	VPS16-001	2750	839aa	ENSP00000369810.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13036	A1A4H0 Q9H269	NM_022575.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380469.3	VPS16-003	2318	695aa	ENSP00000369836.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13037	A1A4H0 Q9H269	NM_080413.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380443.3	VPS16-006	1825	525aa	ENSP00000369808.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1A4H0 Q5JUA8 Q6GMQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453689.1	VPS16-005	966	274aa	ENSP00000417031.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JUA9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000417508.1	VPS16-004	819	226aa	ENSP00000409840.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JUB0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000481812.2	VPS16-008	943	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466415.1	VPS16-007	708	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487461.1	VPS16-002	634	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 819 bps, Translation length: 226 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000417508.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000077661 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000417508.1 VPS16-004

Summary