Transcript: ENST00000229729.6 SLC44A4-001

Description

solute carrier family 44, member 4 [Source:HGNC Symbol;Acc:13941]

Gene Synonyms

C6orf29, CTL4, FLJ14491, NG22

Location

Chromosome 6: 31,830,969-31,846,778 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 16 domains and features, is associated with 6510 variant alleles and maps to 3059 oligo probes.

Gene

This transcript is a product of gene ENSG00000204385.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000544672.1	SLC44A4-202	2634	634aa	ENSP00000444109.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54989	Q53GD3	NM_001178045.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000229729.6	SLC44A4-001	2589	710aa	ENSP00000229729.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4724	Q53GD3	NM_025257.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375562.4	SLC44A4-201	2505	668aa	ENSP00000364712.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54990	Q53GD3	NM_001178044.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414427.1	SLC44A4-004	1233	411aa	ENSP00000398901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000465707.1	SLC44A4-002	681	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462671.1	SLC44A4-003	426	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487680.1	SLC44A4-007	392	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479777.1	SLC44A4-006	655	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475563.1	SLC44A4-005	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 2,589 bps, Translation length: 710 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q53GD3

CCDS

This transcript is a member of the Human CCDS set: CCDS4724

Version

ENST00000229729.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000076234 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000229729.6 SLC44A4-001

Summary