Transcript: ENST00000553839.1 SMOC1-003

Description

SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:20318]

Gene Synonyms

OAS

Location

About this transcript

This transcript has 4 exons, is associated with 10432 variant alleles and maps to 84 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381280.4	SMOC1-002	3666	434aa	ENSP00000370680.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9798	Q9H4F8	NM_022137.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361956.3	SMOC1-001	2040	435aa	ENSP00000355110.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32110	Q9H4F8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555917.1	SMOC1-005	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553839.1	SMOC1-003	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557483.1	SMOC1-004	519	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 551 bps,

Version

ENST00000553839.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000412468 (version 1)