Transcript: ENST00000508652.1 TMA16-002

Description

translation machinery associated 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25638]

Gene Synonyms

C4orf43, FLJ11184

Location

Chromosome 4: 164,415,820-164,437,254 forward strand.

About this transcript

This transcript has 5 exons, is associated with 8624 variant alleles and maps to 205 oligo probes.

Gene

This transcript is a product of gene ENSG00000198498.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358572.5	TMA16-001	1978	203aa	ENSP00000351380.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43278	D6RA57 Q96EY4	NM_018352.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509657.1	TMA16-003	933	242aa	ENSP00000425347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000513272.1	TMA16-005	803	88aa	ENSP00000426933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RE67	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513134.1	TMA16-006	747	101aa	ENSP00000423901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RC31	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508268.1	TMA16-007	608	144aa	ENSP00000423375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA57	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511562.1	TMA16-004	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508652.1	TMA16-002	1195	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506214.1	TMA16-008	843	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503148.1	TMA16-009	630	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,195 bps,

Version

ENST00000508652.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000365209 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000508652.1 TMA16-002

Summary