Transcript: ENST00000373250.3 HMGN5-007

Description

high mobility group nucleosome binding domain 5 [Source:HGNC Symbol;Acc:8013]

Gene Synonyms

NBP-45, NSBP1

Location

Chromosome X: 80,370,484-80,377,137 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 1938 variant alleles and maps to 248 oligo probes.

Gene

This transcript is a product of gene ENSG00000198157.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358130.2	HMGN5-001	2126	282aa	ENSP00000350848.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14448	P82970 Q5JSK7 Q5JSK8 Q5JSL0	NM_030763.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436386.1	HMGN5-002	859	102aa	ENSP00000413402.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JSK7 Q5JSK8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447319.1	HMGN5-004	742	201aa	ENSP00000408060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JSK9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451455.1	HMGN5-003	720	89aa	ENSP00000404810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JSK7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430960.1	HMGN5-006	578	148aa	ENSP00000399626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JSK7 Q5JSK8 Q5JSL0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000373250.3	HMGN5-007	572	161aa	ENSP00000362347.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JSK6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000491275.1	HMGN5-005	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 572 bps, Translation length: 161 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000373250.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000057360 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000373250.3 HMGN5-007

Summary