Transcript: ENST00000356126.3 PSMD12-001

Description

proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 [Source:HGNC Symbol;Acc:9557]

Gene Synonyms

Rpn5, p55

Location

Chromosome 17: 65,334,032-65,362,743 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 7 domains and features, is associated with 13257 variant alleles and maps to 639 oligo probes.

Gene

This transcript is a product of gene ENSG00000197170.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356126.3	PSMD12-001	4406	456aa	ENSP00000348442.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11669	O00232	NM_002816.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357146.4	PSMD12-002	2437	436aa	ENSP00000349667.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11670	O00232	NM_174871.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584008.1	PSMD12-003	1752	42aa	ENSP00000462525.1	Nonsense mediated decay		J3KSK1	-	-
ENST00000579365.1	PSMD12-007	560	38aa	ENSP00000463017.1	Nonsense mediated decay		J3KTJ5	-	-
ENST00000581618.1	PSMD12-006	613	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584289.1	PSMD12-004	1090	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578015.1	PSMD12-008	448	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577724.1	PSMD12-009	377	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 4,406 bps, Translation length: 456 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00232

CCDS

This transcript is a member of the Human CCDS set: CCDS11669

Version

ENST00000356126.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000277103 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000356126.3 PSMD12-001

Summary