Transcript: ENST00000494090.2 COL27A1-002

Description

collagen, type XXVII, alpha 1 [Source:HGNC Symbol;Acc:22986]

Gene Synonyms

FLJ11895, KIAA1870, MGC11337

Location

About this transcript

This transcript has 58 exons, is annotated with 14 domains and features, is associated with 61941 variant alleles and maps to 1255 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356083.3	COL27A1-001	7790	1860aa	ENSP00000348385.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6802	Q8IZC6	NM_032888.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451716.1	COL27A1-004	2865	714aa	ENSP00000391328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T1U7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494090.2	COL27A1-002	5329	485aa	ENSP00000432928.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477421.2	COL27A1-006	3991	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468565.1	COL27A1-003	1946	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490831.1	COL27A1-008	666	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494780.1	COL27A1-007	514	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485397.1	COL27A1-005	463	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 58, Coding exons: 14, Transcript length: 5,329 bps, Translation length: 485 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000494090.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000053764 (version 3)