Transcript: ENST00000374949.2 HLA-DQA1-009

Description

major histocompatibility complex, class II, DQ alpha 1 [Source:HGNC Symbol;Acc:4942]

Gene Synonyms

CD, CELIAC1, DQ-A1, GSE, HLA-DQA

Location

Chromosome 6: 32,605,197-32,610,794 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 15 domains and features, is associated with 4150 variant alleles and maps to 709 oligo probes.

Gene

This transcript is a product of gene ENSG00000196735.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000343139.5	HLA-DQA1-001	1591	255aa	ENSP00000339398.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4752	F6UB03 O19703 P01909 Q30065 Q30066 Q67A92 Q67A93 Q67AA5 Q67AA6 Q67AA7 Q67AB5 Q67AB6 Q67AB7 Q67AB8 Q67AB9 Q67AC0 Q67AC1 Q67AC2 Q67AC3 Q67AC4 Q67AH6 Q67AH7 Q67AH8 Q67AH9 Q67AI0 Q67AI1 Q67AI2	NM_002122.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395363.1	HLA-DQA1-004	1206	255aa	ENSP00000378767.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4752	F6UB03 O19703 P01909 Q30065 Q30066 Q67A92 Q67A93 Q67AA5 Q67AA6 Q67AA7 Q67AB5 Q67AB6 Q67AB7 Q67AB8 Q67AB9 Q67AC0 Q67AC1 Q67AC2 Q67AC3 Q67AC4 Q67AH6 Q67AH7 Q67AH8 Q67AH9 Q67AI0 Q67AI1 Q67AI2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374949.2	HLA-DQA1-009	1060	255aa	ENSP00000364087.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4752	F6UB03 O19703 P01909 Q30065 Q30066 Q67A92 Q67A93 Q67AA5 Q67AA6 Q67AA7 Q67AB5 Q67AB6 Q67AB7 Q67AB8 Q67AB9 Q67AC0 Q67AC1 Q67AC2 Q67AC3 Q67AC4 Q67AH6 Q67AH7 Q67AH8 Q67AH9 Q67AI0 Q67AI1 Q67AI2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000496318.1	HLA-DQA1-007	696	214aa	ENSP00000437302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PMV2 F6UB03 O19703 Q67A92 Q67A93 Q67AA5 Q67AA6 Q67AA7 Q67AB5 Q67AB6 Q67AB7 Q67AB8 Q67AB9 Q67AC0 Q67AC1 Q67AC2 Q67AC3 Q67AC4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000422863.1	HLA-DQA1-010	520	24aa	ENSP00000405797.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6UB03	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000482745.1	HLA-DQA1-002	2135	53aa	ENSP00000436546.1	Nonsense mediated decay		E9PI37 F6UB03 O19703 Q67A92 Q67A93 Q67AA5 Q67AA6 Q67AA7 Q67AB5 Q67AB6 Q67AB7 Q67AB8 Q67AB9 Q67AC0 Q67AC1 Q67AC2 Q67AC3 Q67AC4	-	-
ENST00000460633.1	HLA-DQA1-003	5450	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,060 bps, Translation length: 255 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P01909

CCDS

This transcript is a member of the Human CCDS set: CCDS4752

Version

ENST00000374949.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000276110 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000374949.2 HLA-DQA1-009

Summary