Transcript: ENST00000480695.1 TRRAP-006

Description

transformation/transcription domain-associated protein [Source:HGNC Symbol;Acc:12347]

Gene Synonyms

PAF350/400, PAF400, STAF40, TR-AP, Tra1

Location

Chromosome 7: 98,573,583-98,575,903 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1223 variant alleles and maps to 111 oligo probes.

Gene

This transcript is a product of gene ENSG00000196367.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000359863.4	TRRAP-001	12677	3859aa	ENSP00000352925.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59066	C9K0N1 Q9Y4A5	NM_001244580.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355540.3	TRRAP-002	12590	3830aa	ENSP00000347733.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5659	C9K0N1 Q9Y4A5	NM_003496.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446306.3	TRRAP-004	12492	3848aa	ENSP00000403708.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9K0N1 F2Z2U4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456197.1	TRRAP-003	11654	3588aa	ENSP00000394645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000417523.1	TRRAP-005	550	71aa	ENSP00000401107.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9K0N1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000480695.1	TRRAP-006	805	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 805 bps,

Version

ENST00000480695.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000317983 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000480695.1 TRRAP-006

Summary