Transcript: ENST00000374051.3 NLGN3-001

Description

neuroligin 3 [Source:HGNC Symbol;Acc:14289]

Gene Synonyms

ASPGX1, AUTSX1, HNL3, KIAA1480, NL3

Location

About this transcript

This transcript has 7 exons, is annotated with 17 domains and features, is associated with 8837 variant alleles and maps to 489 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374051.3	NLGN3-001	3913	828aa	ENSP00000363163.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14407	Q9NZ94	NM_018977.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536169.1	NLGN3-201	3863	808aa	ENSP00000445298.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55442	B7Z3P8 D3DVV1 E7EVK0	NM_001166660.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358741.3	NLGN3-002	3046	848aa	ENSP00000351591.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55441	Q9NZ94	NM_181303.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395855.2	NLGN3-003	1862	513aa	ENSP00000379196.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EVK0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000476589.1	NLGN3-004	3153	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 3,913 bps, Translation length: 828 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZ94

CCDS

This transcript is a member of the Human CCDS set: CCDS14407

Version

ENST00000374051.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000057120 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.