Transcript: ENST00000394329.3 FAT4-001

Description

FAT atypical cadherin 4 [Source:HGNC Symbol;Acc:23109]

Gene Synonyms

CDHF14, CDHR11, FAT-J, FATJ, NBLA00548, VMLDS2

Location

About this transcript

This transcript has 17 exons, is annotated with 259 domains and features, is associated with 79824 variant alleles and maps to 720 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394329.3	FAT4-001	16123	4981aa	ENSP00000377862.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3732	B3KRB4 Q6V0I7	NM_024582.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000335110.5	FAT4-002	9669	3222aa	ENSP00000335169.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KRB4 Q6V0I7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509444.1	FAT4-003	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 16,123 bps, Translation length: 4,981 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6V0I7

CCDS

This transcript is a member of the Human CCDS set: CCDS3732

Version

ENST00000394329.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256765 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.