Transcript: ENST00000378675.3 MMP23B-002

Description

matrix metallopeptidase 23B [Source:HGNC Symbol;Acc:7171]

Gene Synonyms

MIFR, MIFR-1, MMP22, MMP23A

Location

Chromosome 1: 1,567,558-1,570,030 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 13 domains and features, is associated with 1223 variant alleles and maps to 566 oligo probes.

Gene

This transcript is a product of gene ENSG00000189409.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356026.5	MMP23B-001	1326	390aa	ENSP00000348308.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30559	J3KRS4 O75900	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378675.3	MMP23B-002	1309	386aa	ENSP00000367945.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75086	NM_006983.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479814.1	MMP23B-003	903	265aa	ENSP00000426293.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YA69	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000503792.1	MMP23B-010	799	258aa	ENSP00000426857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YAE5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000435358.1	MMP23B-004	750	242aa	ENSP00000405867.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000472264.1	MMP23B-005	556	166aa	ENSP00000424976.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6REP6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512731.1	MMP23B-009	1531	238aa	ENSP00000423780.1	Nonsense mediated decay		B4DMZ6	-	-
ENST00000490017.1	MMP23B-008	530	87aa	ENSP00000462142.1	Nonsense mediated decay		J3KRS4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489782.1	MMP23B-006	626	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486400.1	MMP23B-007	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,309 bps, Translation length: 386 residues

Version

ENST00000378675.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000158493 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000378675.3 MMP23B-002

Summary