Transcript: ENST00000379558.4 FAM179A-003

Description

family with sequence similarity 179, member A [Source:HGNC Symbol;Acc:33715]

Gene Synonyms

FLJ43249, LOC165186

Location

Chromosome 2: 29,204,164-29,284,239 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 10 domains and features, is associated with 38383 variant alleles and maps to 586 oligo probes.

Gene

This transcript is a product of gene ENSG00000189350.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379558.4	FAM179A-003	12691	1019aa	ENSP00000368876.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1769	B5MCN5 C9JJW1 C9JLI7 Q6ZUX3	NM_199280.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000403861.2	FAM179A-201	3381	964aa	ENSP00000384699.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MCN5 C9JJW1 C9JLI7 F8W8E4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000401723.1	FAM179A-007	720	162aa	ENSP00000384897.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MCN5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000440012.1	FAM179A-005	658	112aa	ENSP00000396739.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JJW1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420297.1	FAM179A-004	493	69aa	ENSP00000402415.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JLI7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465300.1	FAM179A-001	1932	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475900.1	FAM179A-002	7450	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460951.1	FAM179A-006	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 19, Transcript length: 12,691 bps, Translation length: 1,019 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZUX3

CCDS

This transcript is a member of the Human CCDS set: CCDS1769

Version

ENST00000379558.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000317848 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000379558.4 FAM179A-003

Summary