Transcript: ENST00000416796.1 LRRK2-001

Description

leucine-rich repeat kinase 2 [Source:HGNC Symbol;Acc:18618]

Gene Synonyms

AURA17, DARDARIN, DKFZp434H2111, FLJ45829, PARK8, RIPK7, ROCO2

Location

Chromosome 12: 40,590,546-40,677,754 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 2 domains and features, is associated with 38955 variant alleles and maps to 334 oligo probes.

Gene

This transcript is a product of gene ENSG00000188906.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000298910.7	LRRK2-004	9158	2527aa	ENSP00000298910.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31774	Q5S007	NM_198578.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000343742.2	LRRK2-002	4740	1271aa	ENSP00000341930.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2VED2 E9PC85	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416796.1	LRRK2-001	1655	521aa	ENSP00000398726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBF0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430804.1	LRRK2-005	6400	207aa	ENSP00000410821.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000481256.1	LRRK2-007	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479187.1	LRRK2-003	8306	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474202.1	LRRK2-006	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 1,655 bps, Translation length: 521 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000416796.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000132847 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000416796.1 LRRK2-001

Summary