Transcript: ENST00000504541.1 COL4A5-010

Description

collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:2207]

Gene Synonyms

ASLN, ATS, CA54

Location

Chromosome X: 107,936,052-107,940,166 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 9 domains and features, is associated with 1461 variant alleles and maps to 278 oligo probes.

Gene

This transcript is a product of gene ENSG00000188153.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000328300.6	COL4A5-006	6483	1691aa	ENSP00000331902.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35366	B4DFF0 H0Y9R8 P29400	NM_033380.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361603.2	COL4A5-001	6469	1685aa	ENSP00000354505.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14543	B4DFF0 H0Y9R8 P29400	NM_000495.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504541.1	COL4A5-010	859	73aa	ENSP00000424845.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9R8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000515658.1	COL4A5-009	790	115aa	ENSP00000423520.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000505728.1	COL4A5-011	537	174aa	ENSP00000424137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477429.1	COL4A5-004	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000510690.1	COL4A5-008	382	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483338.1	COL4A5-002	3622	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470339.1	COL4A5-005	782	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489230.1	COL4A5-003	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 859 bps, Translation length: 73 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000504541.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000360027 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000504541.1 COL4A5-010

Summary