Transcript: ENST00000442047.1 AC002472.13-004

Description

Leucine-rich repeat-containing protein LOC400891 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZQY2]

Location

Chromosome 22: 21,400,276-21,414,736 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 22 domains and features, is associated with 6644 variant alleles and maps to 318 oligo probes.

Gene

This transcript is a product of gene ENSG00000187905.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000342608.4	AC002472.13-201	3693	391aa	ENSP00000341179.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6ZQY2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543388.1	AC002472.13-202	3226	161aa	ENSP00000441009.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442047.1	AC002472.13-004	1098	366aa	ENSP00000394078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9JK49	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000497328.1	AC002472.13-001	4803	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000473769.1	AC002472.13-002	3223	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000469766.1	AC002472.13-003	696	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,098 bps, Translation length: 366 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000442047.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000320473 (version 2)

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Transcript: ENST00000442047.1 AC002472.13-004

Summary