Transcript: ENST00000438547.2 SEMA4D-004

Description

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:10732]

Gene Synonyms

C9orf164, CD100, FLJ39737, M-sema-G, SEMAJ, coll-4

Location

Chromosome 9: 91,992,150-92,094,805 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 23 domains and features, is associated with 48280 variant alleles and maps to 709 oligo probes.

Gene

This transcript is a product of gene ENSG00000187764.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000450295.1	SEMA4D-018	5684	862aa	ENSP00000416523.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6685	C9JD54 C9JFP1 C9JYS7 F5H044 Q92854	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438547.2	SEMA4D-004	4824	862aa	ENSP00000405102.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6685	C9JD54 C9JFP1 C9JYS7 F5H044 Q92854	NM_006378.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356444.2	SEMA4D-202	4503	862aa	ENSP00000348822.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6685	C9JD54 C9JFP1 C9JYS7 F5H044 Q92854	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422704.2	SEMA4D-005	4382	862aa	ENSP00000388768.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6685	C9JD54 C9JFP1 C9JYS7 F5H044 Q92854	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420987.1	SEMA4D-203	4275	738aa	ENSP00000391733.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47991	C9JD54 C9JFP1 C9JYS7 F5H044 Q92854	NM_001142287.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000339861.4	SEMA4D-006	4258	738aa	ENSP00000344923.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47991	C9JD54 C9JFP1 C9JYS7 F5H044 Q92854	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455551.2	SEMA4D-001	3594	738aa	ENSP00000411981.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47991	C9JD54 C9JFP1 C9JYS7 F5H044 Q92854	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000343780.4	SEMA4D-201	3146	738aa	ENSP00000343418.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47991	C9JD54 C9JFP1 C9JYS7 F5H044 Q92854	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420101.2	SEMA4D-008	1837	123aa	ENSP00000399948.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q92854	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420681.2	SEMA4D-013	907	146aa	ENSP00000390754.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD54 C9JFP1 C9JYS7 F5H044	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000540475.1	SEMA4D-020	826	66aa	ENSP00000438389.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD54 F5H044	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000433650.1	SEMA4D-016	602	75aa	ENSP00000413352.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD54 C9JYS7 F5H044	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000418828.1	SEMA4D-014	563	59aa	ENSP00000416747.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD54	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420670.1	SEMA4D-015	433	1aa	ENSP00000405652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000429836.1	SEMA4D-003	2895	548aa	ENSP00000395222.1	Nonsense mediated decay		C9JD54 C9JFP1 C9JYS7 E9PFD9 F5H044	-	-
ENST00000537934.1	SEMA4D-019	2710	548aa	ENSP00000446394.1	Nonsense mediated decay		C9JD54 C9JFP1 C9JYS7 E9PFD9 F5H044	-	-
ENST00000469653.1	SEMA4D-009	3533	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475255.1	SEMA4D-007	3053	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482128.1	SEMA4D-012	493	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464051.1	SEMA4D-002	317	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492386.1	SEMA4D-010	2396	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486935.2	SEMA4D-011	969	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000544513.1	SEMA4D-021	599	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474258.1	SEMA4D-017	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540183.1	SEMA4D-022	176	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 14, Transcript length: 4,824 bps, Translation length: 862 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92854

CCDS

This transcript is a member of the Human CCDS set: CCDS6685

Version

ENST00000438547.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000342401 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000438547.2 SEMA4D-004

Summary