Transcript: ENST00000338560.7 TRPV2-001

Description

transient receptor potential cation channel, subfamily V, member 2 [Source:HGNC Symbol;Acc:18082]

Gene Synonyms

VRL, VRL-1, VRL1

Location

Chromosome 17: 16,318,856-16,340,317 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 33 domains and features, is associated with 10489 variant alleles and maps to 607 oligo probes.

Gene

This transcript is a product of gene ENSG00000187688.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000338560.7	TRPV2-001	2808	764aa	ENSP00000342222.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32576	J3QKR1 Q9Y5S1	NM_016113.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577397.1	TRPV2-201	2126	334aa	ENSP00000463196.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QKR1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455666.1	TRPV2-006	796	266aa	ENSP00000390014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000581560.1	TRPV2-009	586	138aa	ENSP00000465609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKG5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580788.2	TRPV2-010	530	96aa	ENSP00000466130.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000577865.2	TRPV2-011	512	90aa	ENSP00000467593.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EPY7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000577277.2	TRPV2-007	473	77aa	ENSP00000464850.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000583241.1	TRPV2-008	528	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475513.1	TRPV2-004	762	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493434.1	TRPV2-005	483	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 2,808 bps, Translation length: 764 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5S1

CCDS

This transcript is a member of the Human CCDS set: CCDS32576

Version

ENST00000338560.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000130464 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000338560.7 TRPV2-001

Summary