Transcript: ENST00000397417.2 IFT140-002

Description

intraflagellar transport 140 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:29077]

Gene Synonyms

KIAA0590, MZSDS, WDTC2, c305C8.4, c380F5.1, gs114

Location

Chromosome 16: 1,560,431-1,660,694 reverse strand.

About this transcript

This transcript has 24 exons, is annotated with 3 domains and features, is associated with 53238 variant alleles and maps to 585 oligo probes.

Gene

This transcript is a product of gene ENSG00000187535.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000426508.2	IFT140-001	5270	1462aa	ENSP00000406012.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10439	H3BNC5 H3BTA5 Q96RY7 Q9UG52	NM_014714.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361339.5	IFT140-006	2987	656aa	ENSP00000354895.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UG52	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569646.1	IFT140-007	643	120aa	ENSP00000454781.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNC5 H3BTA5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000569812.1	IFT140-012	452	113aa	ENSP00000457092.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTA5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568837.1	IFT140-011	414	125aa	ENSP00000458439.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L0Y8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000397417.2	IFT140-002	4023	206aa	ENSP00000380562.2	Nonsense mediated decay		J3KPW0	-	-
ENST00000439987.2	IFT140-003	2580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565298.1	IFT140-005	4727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561954.1	IFT140-009	826	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566818.1	IFT140-010	722	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566052.1	IFT140-008	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 5, Transcript length: 4,023 bps, Translation length: 206 residues

Version

ENST00000397417.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000432775 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000397417.2 IFT140-002

Summary