Transcript: ENST00000524641.1 RNPC3-006

Description

RNA-binding region (RNP1, RRM) containing 3 [Source:HGNC Symbol;Acc:18666]

Gene Synonyms

FLJ20008, KIAA1839, RBM40, RNP, SNRNP65

Location

Chromosome 1: 104,083,983-104,089,657 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 2345 variant alleles and maps to 148 oligo probes.

Gene

This transcript is a product of gene ENSG00000185946.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000533099.1	RNPC3-003	3641	517aa	ENSP00000432886.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS781	E9PPV2 Q96LT9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524631.1	RNPC3-001	2013	516aa	ENSP00000437278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPV2 Q96LT9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423855.2	RNPC3-008	1872	517aa	ENSP00000391432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS781	E9PPV2 Q96LT9	NM_017619.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527062.1	RNPC3-005	768	138aa	ENSP00000436315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPV2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000531883.1	RNPC3-004	686	185aa	ENSP00000431344.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000524641.1	RNPC3-006	547	182aa	ENSP00000435440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000532117.1	RNPC3-009	237	18aa	ENSP00000434721.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533834.1	RNPC3-002	3658	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525323.1	RNPC3-007	432	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 547 bps, Translation length: 182 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000524641.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000390815 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000524641.1 RNPC3-006

Summary