Transcript: ENST00000439701.1 IKZF1-004

Description

IKAROS family zinc finger 1 (Ikaros) [Source:HGNC Symbol;Acc:13176]

Gene Synonyms

Hs.54452, IK1, IKAROS, LYF1, LyF-1, PRO0758, ZNFN1A1, hIk-1

Location

Chromosome 7: 50,348,318-50,470,264 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 23 domains and features, is associated with 36280 variant alleles and maps to 639 oligo probes.

Gene

This transcript is a product of gene ENSG00000185811.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000439701.1	IKZF1-004	3572	477aa	ENSP00000413025.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59055	Q13422	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000331340.3	IKZF1-001	6189	519aa	ENSP00000331614.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q13422	NM_006060.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000357364.4	IKZF1-204	5928	432aa	ENSP00000349928.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q13422	NM_001220768.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000343574.5	IKZF1-201	5928	432aa	ENSP00000342750.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q13422	NM_001220775.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000349824.4	IKZF1-203	5760	376aa	ENSP00000342485.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69299	Q13422	NM_001220776.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000346667.4	IKZF1-202	5499	289aa	ENSP00000340080.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q13422 Q3T907	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000359197.5	IKZF1-002	3487	477aa	ENSP00000352123.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59055	Q13422	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000440768.2	IKZF1-205	3485	226aa	ENSP00000401507.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q13422	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000413698.1	IKZF1-007	1808	174aa	ENSP00000388478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JTB0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000438033.1	IKZF1-003	1748	432aa	ENSP00000396554.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q13422	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000426121.1	IKZF1-006	201	67aa	ENSP00000409588.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3T907	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000492782.1	IKZF1-009	711	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484847.1	IKZF1-008	638	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492119.1	IKZF1-010	584	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471793.1	IKZF1-005	1779	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462201.1	IKZF1-011	1122	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 3,572 bps, Translation length: 477 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13422

CCDS

This transcript is a member of the Human CCDS set: CCDS59055

Version

ENST00000439701.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000342245 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000439701.1 IKZF1-004

Summary