Transcript: ENST00000332408.4 SHC4-001

Description

SHC (Src homology 2 domain containing) family, member 4 [Source:HGNC Symbol;Acc:16743]

Gene Synonyms

RaLP, SHCD

Location

About this transcript

This transcript has 12 exons, is annotated with 25 domains and features, is associated with 58299 variant alleles and maps to 583 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000332408.4	SHC4-001	4558	630aa	ENSP00000329668.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10130	B3KWE9 B3KWT2 F5H5M1 H0YLZ2 Q6S5L8	NM_203349.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396535.3	SHC4-003	2799	387aa	ENSP00000379786.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KWE9 F5H5M1 H0YLZ2 Q6S5L8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537958.1	SHC4-002	1447	344aa	ENSP00000443300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KWE9 F5H5M1 H0YLZ2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558220.1	SHC4-004	885	128aa	ENSP00000453397.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLZ2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557797.1	SHC4-005	821	144aa	ENSP00000453344.1	Nonsense mediated decay		H0YLU6 H0YLZ2	-	-
ENST00000559289.1	SHC4-006	864	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 4,558 bps, Translation length: 630 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6S5L8

CCDS

This transcript is a member of the Human CCDS set: CCDS10130

Version

ENST00000332408.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254371 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.