Transcript: ENST00000557410.1 SV2B-003

Description

synaptic vesicle glycoprotein 2B [Source:HGNC Symbol;Acc:16874]

Gene Synonyms

HsT19680, KIAA0735

Location

About this transcript

This transcript has 15 exons, is annotated with 29 domains and features, is associated with 84700 variant alleles and maps to 559 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394232.1	SV2B-001	11279	683aa	ENSP00000377779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10370	Q7L1I2	NM_014848.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000330276.4	SV2B-201	11202	683aa	ENSP00000332818.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10370	Q7L1I2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545111.2	SV2B-002	2099	532aa	ENSP00000443243.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53972	Q7L1I2	NM_001167580.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557410.1	SV2B-003	4077	683aa	ENSP00000450992.1	Nonsense mediated decay	CCDS10370	Q7L1I2	-	-
ENST00000557291.1	SV2B-004	601	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553727.1	SV2B-005	535	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 12, Transcript length: 4,077 bps, Translation length: 683 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7L1I2

CCDS

This transcript is a member of the Human CCDS set: CCDS10370

Version

ENST00000557410.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000414785 (version 1)