Transcript: ENST00000331968.5 PRKD1-001

Description

protein kinase D1 [Source:HGNC Symbol;Acc:9407]

Gene Synonyms

PKC-MU, PKC-mu, PKCM, PKD, PKD1, PRKCM

Location

Chromosome 14: 30,045,687-30,396,948 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 33 domains and features, is associated with 153160 variant alleles and maps to 681 oligo probes.

Gene

This transcript is a product of gene ENSG00000184304.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331968.5	PRKD1-001	3726	912aa	ENSP00000333568.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9637	Q15139 Q1KKQ2	NM_002742.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415220.2	PRKD1-002	3189	920aa	ENSP00000390535.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WBA3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546371.1	PRKD1-007	585	157aa	ENSP00000447333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YHL5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000549503.1	PRKD1-008	582	117aa	ENSP00000446866.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VZ98	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490795.1	PRKD1-004	492	80aa	ENSP00000447723.1	Nonsense mediated decay		H0YHS9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000551644.1	PRKD1-006	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547441.1	PRKD1-005	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468370.1	PRKD1-003	749	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 3,726 bps, Translation length: 912 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15139

CCDS

This transcript is a member of the Human CCDS set: CCDS9637

Version

ENST00000331968.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000276611 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000331968.5 PRKD1-001

Summary