Transcript: ENST00000509576.1 DDX41-009

Description

DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Source:HGNC Symbol;Acc:18674]

Gene Synonyms

ABS, MGC8828

Location

Chromosome 5: 176,941,982-176,943,951 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 6 domains and features, is associated with 1391 variant alleles and maps to 279 oligo probes.

Gene

This transcript is a product of gene ENSG00000183258.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000507955.1	DDX41-001	2607	622aa	ENSP00000422753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4427	B3KRK2 Q9UJV9	NM_016222.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000330503.7	DDX41-004	2137	640aa	ENSP00000330349.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KRK2 J3KNN5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000509576.1	DDX41-009	819	201aa	ENSP00000426330.1	Nonsense mediated decay		D6RGI7	-	-
ENST00000508279.1	DDX41-013	776	173aa	ENSP00000421460.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000504781.1	DDX41-010	618	126aa	ENSP00000425739.1	Nonsense mediated decay		H0YA06	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000510171.1	DDX41-008	569	49aa	ENSP00000427082.1	Nonsense mediated decay		D6RD33	-	-
ENST00000506965.1	DDX41-017	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505081.1	DDX41-006	2949	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503078.1	DDX41-003	2375	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000507900.1	DDX41-007	1564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515562.1	DDX41-005	1184	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512431.1	DDX41-016	904	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504807.1	DDX41-018	794	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000511040.1	DDX41-011	721	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512334.1	DDX41-015	686	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512027.1	DDX41-014	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513562.1	DDX41-012	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 819 bps, Translation length: 201 residues

Version

ENST00000509576.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373176 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000509576.1 DDX41-009

Summary