Transcript: ENST00000344791.2 LYSMD4-001

Description

LysM, putative peptidoglycan-binding, domain containing 4 [Source:HGNC Symbol;Acc:26571]

Gene Synonyms

FLJ33008

Location

Chromosome 15: 100,267,610-100,273,626 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 4 domains and features, is associated with 3138 variant alleles and maps to 303 oligo probes.

Gene

This transcript is a product of gene ENSG00000183060.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000545021.1	LYSMD4-202	3042	170aa	ENSP00000445357.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66876	B3KWE4	NM_001284422.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344791.2	LYSMD4-001	2885	297aa	ENSP00000342840.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10381	B3KWE4 Q5XG99	NM_152449.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000332728.4	LYSMD4-201	2790	296aa	ENSP00000333008.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66877	B3KWE4 Q5XG99	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409796.1	LYSMD4-005	2672	296aa	ENSP00000386283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66877	B3KWE4 Q5XG99	NM_001284418.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450512.1	LYSMD4-002	559	123aa	ENSP00000400054.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J1B9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000604213.1	LYSMD4-008	2356	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496108.1	LYSMD4-003	2222	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484050.1	LYSMD4-006	551	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479791.1	LYSMD4-004	3001	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493256.1	LYSMD4-007	880	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 2,885 bps, Translation length: 297 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5XG99

CCDS

This transcript is a member of the Human CCDS set: CCDS10381

Version

ENST00000344791.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000313544 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000344791.2 LYSMD4-001

Summary