Transcript: ENST00000502660.1 CSF1R-003

Description

colony stimulating factor 1 receptor [Source:HGNC Symbol;Acc:2433]

Gene Synonyms

C-FMS, CD115, CSF-1R, CSFR, FIM2, FMS, HDLS, M-CSF-R

Location

Chromosome 5: 149,456,467-149,466,117 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 5900 variant alleles and maps to 186 oligo probes.

Gene

This transcript is a product of gene ENSG00000182578.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000286301.3	CSF1R-001	3989	972aa	ENSP00000286301.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4302	D6RGW1 P07333 Q6LEI2	NM_005211.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543093.1	CSF1R-201	921	306aa	ENSP00000445282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGW1 P07333	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511344.1	CSF1R-004	655	49aa	ENSP00000421174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGW1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504875.1	CSF1R-002	3697	671aa	ENSP00000422212.1	Nonsense mediated decay		D6RGW1 E9PEK4 Q59HE0 Q6LEI2	-	-
ENST00000515068.1	CSF1R-007	723	64aa	ENSP00000427545.1	Nonsense mediated decay		H0YAL5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000515239.1	CSF1R-005	584	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502660.1	CSF1R-003	1388	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509861.1	CSF1R-008	886	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513609.1	CSF1R-006	711	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,388 bps,

Version

ENST00000502660.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373781 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000502660.1 CSF1R-003

Summary