Transcript: ENST00000402681.3 C1S-017

Description

complement component 1, s subcomponent [Source:HGNC Symbol;Acc:1247]

Location

Chromosome 12: 7,167,989-7,178,264 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 29 domains and features, is associated with 5163 variant alleles and maps to 507 oligo probes.

Gene

This transcript is a product of gene ENSG00000182326.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000406697.1	C1S-001	3076	688aa	ENSP00000385035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31735	B5MCV4 C9IZP8 C9JY52 F5H7T4 F8WCZ6 P09871	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000328916.3	C1S-003	2972	688aa	ENSP00000328173.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31735	B5MCV4 C9IZP8 C9JY52 F5H7T4 F8WCZ6 P09871	NM_201442.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360817.5	C1S-004	2635	688aa	ENSP00000354057.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31735	B5MCV4 C9IZP8 C9JY52 F5H7T4 F8WCZ6 P09871	NM_001734.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000402681.3	C1S-017	2522	521aa	ENSP00000384171.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7T4 F8WCZ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000403949.1	C1S-007	1034	168aa	ENSP00000384464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MCV4 C9IZP8 C9JY52	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000413211.1	C1S-006	667	103aa	ENSP00000406643.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZP8 C9JY52	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000542978.1	C1S-019	661	157aa	ENSP00000442298.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7T4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000423384.1	C1S-005	573	100aa	ENSP00000399892.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JY52	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000443875.1	C1S-002	2550	355aa	ENSP00000397921.1	Nonsense mediated decay		B5MCV4 C9IZP8 C9JY52 F5H7T4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000495061.1	C1S-016	832	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000541647.1	C1S-018	578	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000543187.1	C1S-020	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461983.1	C1S-014	950	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495053.1	C1S-010	766	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488701.1	C1S-009	634	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473545.1	C1S-012	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489541.1	C1S-008	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470326.1	C1S-013	541	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463798.1	C1S-011	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497061.1	C1S-015	452	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 8, Transcript length: 2,522 bps, Translation length: 521 residues

Version

ENST00000402681.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000401825 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000402681.3 C1S-017

Summary