Transcript: ENST00000333213.6 TSEN54-001

Description

TSEN54 tRNA splicing endonuclease subunit [Source:HGNC Symbol;Acc:27561]

Gene Synonyms

PCH2A, PCH4, SEN54, SEN54L, sen54

Location

Chromosome 17: 73,512,606-73,520,820 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 8 domains and features, is associated with 4831 variant alleles and maps to 482 oligo probes.

Gene

This transcript is a product of gene ENSG00000182173.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000333213.6	TSEN54-001	1944	526aa	ENSP00000327487.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11724	E7EN92 Q7Z6J9	NM_207346.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545228.2	TSEN54-012	1139	259aa	ENSP00000438169.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000434205.3	TSEN54-005	627	72aa	ENSP00000406559.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EN92	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000578415.1	TSEN54-008	994	167aa	ENSP00000464335.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000583173.1	TSEN54-007	798	178aa	ENSP00000463619.1	Nonsense mediated decay		E7EN92 J3QLM6	-	-
ENST00000583818.1	TSEN54-011	765	142aa	ENSP00000461928.1	Nonsense mediated decay		E7EN92 J3KRC5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580013.1	TSEN54-010	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000579449.1	TSEN54-013	786	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583454.1	TSEN54-006	733	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577197.1	TSEN54-014	650	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583634.1	TSEN54-009	282	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,944 bps, Translation length: 526 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z6J9

CCDS

This transcript is a member of the Human CCDS set: CCDS11724

Version

ENST00000333213.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000447618 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000333213.6 TSEN54-001

Summary