Transcript: ENST00000442528.2 SLC35C1-002

Description

solute carrier family 35 (GDP-fucose transporter), member C1 [Source:HGNC Symbol;Acc:20197]

Gene Synonyms

CDG2C, FLJ11320, FUCT1

Location

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 3645 variant alleles and maps to 216 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000314134.3	SLC35C1-001	4171	364aa	ENSP00000313318.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7914	B3KQH0 E9PPI4 E9PS26 Q96A29 Q96K20	NM_018389.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456334.1	SLC35C1-201	3111	351aa	ENSP00000399779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44575	E9PPI4 E9PS26 Q96A29	NM_001145266.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442528.2	SLC35C1-002	1756	351aa	ENSP00000412408.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44575	E9PPI4 E9PS26 Q96A29	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530471.1	SLC35C1-003	695	165aa	ENSP00000432669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPI4 E9PS26	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526817.1	SLC35C1-004	582	72aa	ENSP00000432145.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PS26	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,756 bps, Translation length: 351 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96A29

CCDS

This transcript is a member of the Human CCDS set: CCDS44575

Version

ENST00000442528.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000390138 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.