Transcript: ENST00000340477.5 SYNE4-004

Description

spectrin repeat containing, nuclear envelope family member 4 [Source:HGNC Symbol;Acc:26703]

Gene Synonyms

C19orf46, DFNB76, FLJ36445, Nesp4, Nesprin-4

Location

Chromosome 19: 36,494,212-36,499,684 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 2751 variant alleles and maps to 303 oligo probes.

Gene

This transcript is a product of gene ENSG00000181392.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000324444.3	SYNE4-001	1354	404aa	ENSP00000316130.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42553	Q8N205	NM_001039876.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000490730.1	SYNE4-003	1175	354aa	ENSP00000422716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAE3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000340477.5	SYNE4-004	1004	291aa	ENSP00000343152.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N205	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503121.1	SYNE4-005	453	151aa	ENSP00000425550.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000397428.3	SYNE4-006	382	118aa	ENSP00000380572.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H9KVA3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465425.1	SYNE4-002	2339	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505054.2	SYNE4-007	713	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,004 bps, Translation length: 291 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N205

Version

ENST00000340477.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000362423 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000340477.5 SYNE4-004

Summary