Transcript: ENST00000409122.2 C17orf104-002

Description

chromosome 17 open reading frame 104 [Source:HGNC Symbol;Acc:26670]

Gene Synonyms

FLJ35848

Location

Chromosome 17: 42,733,840-42,753,167 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 4 domains and features, is associated with 8000 variant alleles and maps to 475 oligo probes.

Gene

This transcript is a product of gene ENSG00000180336.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000409122.2	C17orf104-002	4604	952aa	ENSP00000386452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45703	A2RUB1 C9J4A2 C9JYK8	NM_001145080.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409464.1	C17orf104-001	4067	659aa	ENSP00000386586.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2RUB1 C9J4A2 C9JYK8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359945.3	C17orf104-201	2698	825aa	ENSP00000353028.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2RUB1 C9J4A2 C9JYK8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432494.1	C17orf104-005	558	163aa	ENSP00000399809.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4A2 C9JYK8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000456912.1	C17orf104-006	553	129aa	ENSP00000397957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4A2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000425535.1	C17orf104-004	425	71aa	ENSP00000404941.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JC06	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000472403.1	C17orf104-003	2272	150aa	ENSP00000467305.1	Nonsense mediated decay		K7EPA7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000588805.1	C17orf104-007	455	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 4,604 bps, Translation length: 952 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A2RUB1

CCDS

This transcript is a member of the Human CCDS set: CCDS45703

Version

ENST00000409122.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000329171 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000409122.2 C17orf104-002

Summary