Transcript: ENST00000319144.4 ALOX12B-001

Description

arachidonate 12-lipoxygenase, 12R type [Source:HGNC Symbol;Acc:430]

Gene Synonyms

12R-LOX, ARCI2

Location

About this transcript

This transcript has 15 exons, is annotated with 23 domains and features, is associated with 7893 variant alleles and maps to 505 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000319144.4	ALOX12B-001	2502	701aa	ENSP00000315167.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11129	O75342	NM_001139.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577351.1	ALOX12B-004	644	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583276.1	ALOX12B-003	867	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584116.1	ALOX12B-002	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,502 bps, Translation length: 701 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75342

CCDS

This transcript is a member of the Human CCDS set: CCDS11129

Version

ENST00000319144.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000226984 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.